SNP Profiles matching EQX/Z [CHA]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CC	AA
1._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
2._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
3._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
4._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
5._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
6._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
7._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
8._RUQ_109	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
9._EQX_/Z_[CHA]	_	_	AC	GT	CC	_	AC	CC	AA	CC	_	_	_	AA
10._EQX_/Z_[CHA]	_	_	AC	_	CC	_	AC	CC	AA	CC	_	_	_	AA
11._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
12._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
13._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
14._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
15._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
16._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
17._GC-01-055-3-10	TT	AC	AC	_	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA
18._GC-01-055-3-10	TT	AC	AC	GT	CC	GG	AC	CC	AA	CC	AG	GG	CG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	CC	CT	CT	GG	AA	TT	CC	CC	CG
1._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
2._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
3._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
4._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
5._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
6._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
7._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
8._RUQ_109	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
9._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
10._EQX_/Z_[CHA]	AA	CC	GG	CG	CC	_	CT	_	GG	_	_	_	CC	_
11._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
12._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
13._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
14._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
15._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
16._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
17._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG
18._GC-01-055-3-10	AA	CC	GG	CG	CC	CC	CT	TT	GG	AA	TT	CC	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
1._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
2._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
3._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
4._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
5._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
6._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
7._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
8._RUQ_109	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
9._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
10._EQX_/Z_[CHA]	CC	AA	_	CC	_	_	_	GG	_	_	CT	CC	AG	X_X
11._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
12._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
13._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
14._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
15._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
16._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
17._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	CT	CT	CC	AG	X_X
18._GC-01-055-3-10	CC	AA	CC	CC	GT	AG	AT	GG	TT	_	CT	CC	AG	X_X

Input profile: EQX_/Z_[CHA] RUQ_109

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 3 > FP

Dapeng Zhang, 2016

2._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 13 > F

Dapeng Zhang, 2016

3._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 12 > F

Dapeng Zhang, 2016

4._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 15

Dapeng Zhang, 2016

5._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 14

Dapeng Zhang, 2016

6._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 10

Dapeng Zhang, 2016

7._EQX_/Z_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._EQX_/Z_[CHA] RUQ_109

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._EQX_/Z_[CHA]

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 Y9

Dapeng Zhang, 2016

10._EQX_/Z_[CHA]

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 7 > FP

Dapeng Zhang, 2016

11._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP1

12._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

13._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

14._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

15._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

16._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

17._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

18._EQX_/Z_[CHA] GC-01-055-3-10

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484